RT @Miss_Salmonella: Recommendations for performance optimizations when using GATK3.8 and GATK4 https://t.co/toKdI1amA0
RT @Miss_Salmonella: Recommendations for performance optimizations when using GATK3.8 and GATK4 https://t.co/toKdI1amA0
Recommendations for performance optimizations when using GATK3.8 and GATK4 https://t.co/toKdI1amA0
Optimized parameter values can reduce the time of executing the best practices variant calling procedure by 29.3% for GATK3.8 and 16.9% for GATK4 https://t.co/J2PrEV6dp6 https://t.co/HN0RgIdKGg
RT @jsantoyo: Recommendations for performance optimizations when using GATK3.8 and GATK4. https://t.co/wc8XtWNDKE
Quick -> GATK3.8 by splitting into chunks & computing across multiple nodes, resultant walltime will be 4 hr at cost $41.60 on 4 c5.18xlarge. Cheap -> GATK4, multiple samples on 1 node, walltime ∼34.1 hr on 40 samples, cost $2.60/ sample on c5.
Recommendations for performance optimizations when using GATK3.8 and GATK4. https://t.co/wc8XtWNDKE