RT @sinabooeshaghi: @tomkXY @gtuckerkellogg @lpachter In fact, it also looks like the UniverSC paper failed to cite the Alevin preprocessin…
@tomkXY @gtuckerkellogg @lpachter In fact, it also looks like the UniverSC paper failed to cite the Alevin preprocessing tool (which also identifies barcode/umi/sequencing regions for #scRNAseq assays.) https://t.co/dk2clL4HBP, March 2019 https://t.co/6E
@Miguel_RuizC @nilshomer Try alevin, it usually does a good job in dealing with these ambiguous reads. https://t.co/IY2CLkNx0o https://t.co/r6htbpWwXS
Last year, in the alevin publication, @k3yavi et al showed that assignment of all the reads in scRNA-seq was critical for accurate estimation of abundance across categories of genes by uniqueness. 2/7 https://t.co/v4BoFAnKUt
RT @JonathanGoeke: Link to the alevin paper: https://t.co/KpjkRPoMA0
Link to the alevin paper: https://t.co/KpjkRPoMA0
@lpachter @fakechek1 @sinabooeshaghi @olgabot @ckingsford @nomad421 @k3yavi @pmelsted It’s a new spin - I could not find any mention of “validating” CellRanger results in your manuscript. Alevin paper has already made a direct and careful comparison to the
RT @mikelove: @ATpoint90 @k3yavi @cshlcourses Not recorded, best for now is Alevin pub. E.g. this experiment with pseudo bulk and bulk is F…
@ATpoint90 @k3yavi @cshlcourses Not recorded, best for now is Alevin pub. E.g. this experiment with pseudo bulk and bulk is Figure 4 in section "Accuracy of estimates against bulk data": https://t.co/v4BoFAnKUt
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
RT @AedinCulhane: Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin…
Better alignment of scRNAseq. Currently 10-20% reads discarded if map between genes. From Avi in @nomad421 team Alevin efficiently estimates accurate gene abundances from dscRNA-seq data | Genome Biology | Full Text https://t.co/ymVELM4nyT
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @scell_papers: Alevin efficiently estimates accurate gene abundances from dscRNA-seq data. https://t.co/XRMNrSZD9H
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data. https://t.co/f2jbHB97rT
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data. https://t.co/XRMNrSZD9H
Very proud of the tremendous work put in by @k3yavi and Laraib on this (I have great students!), and it was such a pleasure to collaborate with Tom Smith and @IanSudbery!
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data https://t.co/o49ROayPSE
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data https://t.co/qse37kzq0G
RT @ivivek87: How am I not surprised to see another wonder from @nomad421 team. Kudos to @k3yavi @IanSudbery & team Alevin. Looks pretty im…
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
How am I not surprised to see another wonder from @nomad421 team. Kudos to @k3yavi @IanSudbery & team Alevin. Looks pretty impressive with the current benchmark for droplet-based #SingleCell #RNASeq processing and UMI dedups. Like the EM, equivalence c
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @strnr: Now published: https://t.co/MebXmygEVl https://t.co/R1kIj2cka6
Now published: https://t.co/MebXmygEVl
RT @k3yavi: Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Larai…
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
Alevin: Our method to quantify droplet based single cell gene-expression is published today ! Special thanks to our team Laraib, Tom, @IanSudbery, @nomad421 and the reviewers. Also, submission to publication in less than 4 months, @GenomeBiology that's re
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
RT @GenomeBiology: Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including U…
Alevin is a method from @k3yavi, @nomad421 and others for processing droplet-based single cell RNA-seq data, including UMI deduplication https://t.co/r0k4L6tg43 https://t.co/0VJAr4agIn