#Haplotigs inflate assembled #genome size and they lower coverage because each haplotig gets a portion of the true genome coverage. This give a bimodal pattern on coverage across the genome. See this publication (https://t.co/66846Sfprt) for more informa
1. We used colony fleas, so expect minimal heterozygosity. 2. purge_haplotigs (https://t.co/uD2rdzNrc9) identified no haplotigs in our final assembly. 3. 98% of duplicates have RNA-seq support from an unrelated colony. 6/9
@ClaireMerot I used purge_haplotigs for removing redundant contigs coming from heterozygous genomes. It worked pretty well for us and don't remember problems for installing https://t.co/pVFolie637
RT @razoralign: Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies: https://t.co/hSpe89uiXx https://t.co/…
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies: https://t.co/hSpe89uiXx https://t.co/butS7twOvB
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies https://t.co/8KwQLBdxkF #bmcbioinformatics
Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies https://t.co/aDzpo9ASJw #bioinformatics