@AstrobioMike @ctitusbrown @merenbey @KlingJoshua @acritschristoph @MattagenOlmics @BradenTierney @BradenTierney and I will make a paper to test this out in depth, like we did for RNA-seq here: https://t.co/RUazEPFVeT
Short sequences are generally worst than longer ones. But why? And what is a good length? This article nicely describes it. https://t.co/nEwVu8zRPO
RT @loyalgoff: @GreeneScientist @michaelhoffman Always paired over single end for assembly and quant with RNA. https://t.co/BoMMC2am0R. Fig1
RT @loyalgoff: @GreeneScientist @michaelhoffman Always paired over single end for assembly and quant with RNA. https://t.co/BoMMC2am0R. Fig1
@GreeneScientist @michaelhoffman Always paired over single end for assembly and quant with RNA. https://t.co/BoMMC2am0R. Fig1
@nickschurch @Clive_G_Brown @macmanes @methylnick @BioMickWatson @BioMath @torstenseemann @AntoBeck @BGI_Intl @BGI_Genomics @nanopore @illumina “The impact of read length on quantification of differentially expressed genes and splice junction detection “ h
@vallens @macmanes @lpachter @BigGoodBo Read length doesn’t matter much: https://t.co/Trjv0IHz5v
The impact of read length on quantification of differentially expressed genes and splice junction... https://t.co/AeX0FvICqt #genomebiology
RT @mason_lab: @beryl_bbc @BioMickWatson @genetics_blog @MrsLaviniaG check this out https://t.co/RUazEPFVeT The impact of read length on D…
@beryl_bbc @BioMickWatson @genetics_blog @MrsLaviniaG check this out https://t.co/RUazEPFVeT The impact of read length on DEGs and isoforms
@JamesPBLloyd @genetics_blog Maybe this paper is relevant (https://t.co/w0GKg5BrYL)?
RT @JG_Underwood: @BioMickWatson @pathogenomenick @vallens @lpachter handy paper for RL as it pertains to quant/detect splice junc. https:…
RT @JG_Underwood: @BioMickWatson @pathogenomenick @vallens @lpachter handy paper for RL as it pertains to quant/detect splice junc. https:…
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
"The impact of read length on quantification of differentially expressed genes and splice junction detection" http://t.co/CSQ3iP5nfm
@generoom @BioMickWatson @BioMath @hkm256 @generoom @BioMath maybe use #howmanyreadsforRNAseqDGE to collect papers? http://t.co/PFPawo6NGf
50bp single-end reads is OK 4 differential expression. Splicing detection improves with pairedend longer rds. http://t.co/0WjKexY8rX
Read length above 50 bps does not improve DEG detection. What about sequence similar paralogs? http://t.co/duDCkNzNn5
Read length above 50 bps does not improve DEG detection. What about sequence similar paralogs? http://t.co/duDCkNzNn5
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
Impact of read length on quantification of differentially expressed genes & splice junction detection @GenomeBiology http://t.co/3fWbYYHOTC
The impact of read length on quantification of differentially expressed genes and splice junction detection: http://t.co/vq8bHvw7gi
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
CT @rnomics/bioinfo Genome Biology | Abstract | The impact of read length on quantification of differentially… http://t.co/PgZksnfP8t
CT @rnomics/bioscience Genome Biology | Abstract | The impact of read length on quantification of differentially… http://t.co/PgZksnfP8t
"The impact of read length on quantification of differentially expressed genes and splice junction detection" #rnaseq http://t.co/uLFH2ioNSS
"The impact of read length on quantification of differentially expressed genes and splice junction detection" #rnaseq http://t.co/uLFH2ioNSS
"The impact of read length on quantification of differentially expressed genes and splice junction detection" #rnaseq http://t.co/uLFH2ioNSS
"The impact of read length on quantification of differentially expressed genes and splice junction detection" #rnaseq http://t.co/uLFH2ioNSS
"We found that there is little difference for the detection of differential expression regardless of read length." http://t.co/VvWIEQK3Uv
"We found that there is little difference for the detection of differential expression regardless of read length." http://t.co/VvWIEQK3Uv
The impact of read length on quantification of differentially expressed genes and splice junction detection: http://t.co/vq8bHvw7gi
Latest @mason_lab RT @kellyquek: The impact of read length on quantification of DEGs and splice junction detection http://t.co/UNMeDNGJkO
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/T5GfuZwRkh
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/T5GfuZwRkh
Rosenfeld, @mason_lab &co on the impact of read length on quantification of DE genes http://t.co/N25HutJelr #genomics
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
Top #tweeted story in #bioscience: Genome Biology | Abstract | The impact of r… http://t.co/s0CZklQ8wL, see more http://t.co/kME3G1o122
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of DR genes and splice junction detection http://t.co/Ca3RLUjlIR via @biomedcentral
The impact of read length on quantification of DR genes and splice junction detection http://t.co/Ca3RLUjlIR via @genomeresearch
Rosenfeld, @mason_lab &co on the impact of read length on quantification of DE genes http://t.co/N25HutJelr #genomics
Rosenfeld, @mason_lab &co on the impact of read length on quantification of DE genes http://t.co/N25HutJelr #genomics
We knew this already // The impact of read length on quantification of DE genes and splice junction detection http://t.co/VXlC8mGW1y
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
CT @rnomics/bioscience Genome Biology | Abstract | The impact of read length on quantification of differentially… http://t.co/PgZksnfP8t
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
mt @SeqComplete : Genome Biology | Abstract | The impact of read length on qua… http://t.co/KASoNWXZVH, see more http://t.co/D9GipwS8tX
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection - http://t.co/0UzGPjguKO - #KISS
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection - http://t.co/0UzGPjguKO - #KISS
Impact of read length on quantification of diff expressed genes and splice junction detection http://t.co/3EOcP9hBaW #genomebiology
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/OHUHp4GA1N
"The impact of read length on quantification of differentially expressed genes and splice junction detection" http://t.co/0U0WTF5tJ6
CT @rnomics/bioinfo Genome Biology | Abstract | The impact of read length on quantification of differentially… http://t.co/PgZksnfP8t
Increasing #RNSeq read length beyond 50bp single end doesn't improve ability to call differentially expressed genes http://t.co/l4qNFyrypJ
GenomeBiology: The impact of read length on quantification of differentially expressed genes and splice juncti... http://t.co/fRye72pyVW
GenomeBiology: The impact of read length on quantification of differentially expressed genes and splice juncti... http://t.co/fRye72pyVW
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection:… http://t.co/4e4KkbNK3O #BMC
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection - woot! http://t.co/ZG7AwHvahR
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection. http://t.co/W2eOKV92eh
The impact of read length on quantification of differentially expressed genes and splice junction detection - woot! http://t.co/ZG7AwHvahR
The impact of read length on quantification of differentially expressed genes and splice junction detection - woot! http://t.co/ZG7AwHvahR
Abstract: The initial next-generation sequencing technologies produced reads of 25 or 36 bp, and only from a s... http://t.co/ayl4IAyoQN
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/qwoaCUa2aj
The impact of read length on quantification of differentially expressed genes and splice junction detection http://t.co/WnwlAi2Zfi